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349 lines
16 KiB
349 lines
16 KiB
<?php
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// turn on warnings and notice during developement
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include('initialize/PhpErrorSettings.inc.php');
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// Project: Web Reference Database (refbase) <http://www.refbase.net>
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// Copyright: Matthias Steffens <mailto:refbase@extracts.de> and the file's
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// original author(s).
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//
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// This code is distributed in the hope that it will be useful,
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// but WITHOUT ANY WARRANTY. Please see the GNU General Public
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// License for more details.
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//
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// File: ./import_csa.php
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// Repository: $HeadURL: file:///svn/p/refbase/code/branches/bleeding-edge/import_csa.php $
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// Author(s): Matthias Steffens <mailto:refbase@extracts.de>
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//
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// Created: 21-Nov-03, 22:05
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// Modified: $Date: 2012-02-27 20:25:30 +0000 (Mon, 27 Feb 2012) $
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// $Author: msteffens $
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// $Revision: 1337 $
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// Import form that offers to import records from the "Cambridge Scientific Abstracts" (CSA)
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// Internet Database Service (<http://www.csa1.co.uk/csa/index.html>). This import form requires
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// the "full record" format offered by the CSA Internet Database Service.
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// Incorporate some include files:
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include 'includes/header.inc.php'; // include header
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include 'includes/footer.inc.php'; // include footer
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include 'includes/include.inc.php'; // include common functions
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include 'initialize/ini.inc.php'; // include common variables
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// --------------------------------------------------------------------
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// START A SESSION:
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// call the 'start_session()' function (from 'include.inc.php') which will also read out available session variables:
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start_session(true);
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// Extract session variables:
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if (isset($_SESSION['errors']))
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{
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$errors = $_SESSION['errors']; // read session variable (only necessary if register globals is OFF!)
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// Note: though we clear the session variable, the current error message is still available to this script via '$errors':
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deleteSessionVariable("errors"); // function 'deleteSessionVariable()' is defined in 'include.inc.php'
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}
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else
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$errors = array(); // initialize the '$errors' variable in order to prevent 'Undefined variable...' messages
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if (isset($_SESSION['formVars']))
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{
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$formVars = $_SESSION['formVars']; // read session variable (only necessary if register globals is OFF!)
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// Remove slashes from parameter values if 'magic_quotes_gpc = On':
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foreach($formVars as $varname => $value)
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$formVars[$varname] = stripSlashesIfMagicQuotes($value); // function 'stripSlashesIfMagicQuotes()' is defined in 'include.inc.php'
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// Note: though we clear the session variable, the current form variables are still available to this script via '$formVars':
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deleteSessionVariable("formVars"); // function 'deleteSessionVariable()' is defined in 'include.inc.php'
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}
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else
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$formVars = array();
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// --------------------------------------------------------------------
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// Initialize preferred display language:
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// (note that 'locales.inc.php' has to be included *after* the call to the 'start_session()' function)
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include 'includes/locales.inc.php'; // include the locales
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// --------------------------------------------------------------------
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// If there's no stored message available:
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if (!isset($_SESSION['HeaderString']))
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{
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if (empty($errors)) // provide one of the default messages:
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{
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if (isset($_SESSION['user_permissions']) AND preg_match("/allow_batch_import/", $_SESSION['user_permissions'])) // if the 'user_permissions' session variable does contain 'allow_batch_import'...
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$HeaderString = "Import records from Cambridge Scientific Abstracts:"; // Provide the default message
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else
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$HeaderString = "Import a record from Cambridge Scientific Abstracts:"; // Provide the default message
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}
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else // -> there were errors validating the user's data input
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$HeaderString = "<b><span class=\"warning\">There were validation errors regarding the data you entered:</span></b>";
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}
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else // there is already a stored message available
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{
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$HeaderString = $_SESSION['HeaderString']; // extract 'HeaderString' session variable (only necessary if register globals is OFF!)
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// Note: though we clear the session variable, the current message is still available to this script via '$HeaderString':
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deleteSessionVariable("HeaderString"); // function 'deleteSessionVariable()' is defined in 'include.inc.php'
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}
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// Adopt the page title & some labels according to the user's permissions:
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if (isset($_SESSION['user_permissions']) AND !preg_match("/allow_batch_import/", $_SESSION['user_permissions'])) // if the 'user_permissions' session variable does NOT contain 'allow_batch_import'...
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{
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$pageTitle = " -- Import CSA Record"; // adopt page title
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$textEntryFormLabel = "Import CSA Full Record"; // adopt the label for the text entry form
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$rowSpan = ""; // adopt table row span parameter
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}
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else
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{
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$pageTitle = " -- Import CSA Records";
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$textEntryFormLabel = "Import CSA Full Records";
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$rowSpan = " rowspan=\"2\"";
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}
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// Extract the view type requested by the user (either 'Mobile', 'Print', 'Web' or ''):
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// ('' will produce the default 'Web' output style)
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if (isset($_REQUEST['viewType']))
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$viewType = $_REQUEST['viewType'];
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else
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$viewType = "";
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// If there were some errors on submit -> Re-load the data that were submitted by the user:
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if (!empty($errors))
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{
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if (isset($formVars['sourceText'])) // '$formVars['sourceText']' may be non-existent in the (unlikely but possible) event that a user calls 'import_csa_modify.php' directly
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$sourceText = $formVars['sourceText'];
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else
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$sourceText = "";
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// check if we need to set the checkbox in front of "Display original source data":
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if (isset($formVars['showSource'])) // the user did mark the 'showSource' checkbox
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$showSource = $formVars['showSource'];
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else
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$showSource = "";
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if (isset($formVars['importRecordsRadio'])) // 'importRecordsRadio' is only set if user has 'batch_import' permission
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$importRecordsRadio = $formVars['importRecordsRadio'];
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else
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$importRecordsRadio = "";
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if (isset($formVars['importRecords'])) // 'importRecords' is only set if user has 'batch_import' permission
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$importRecords = $formVars['importRecords'];
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else
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$importRecords = "";
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// check whether the user marked the checkbox to skip records with unrecognized data format:
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if (isset($formVars['skipBadRecords']))
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$skipBadRecords = $formVars['skipBadRecords'];
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else
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$skipBadRecords = "";
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}
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else // display an empty form (i.e., set all variables to an empty string [""] or their default values, respectively):
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{
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$sourceText = "";
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$showSource = "1";
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$importRecordsRadio = "only";
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$importRecords = "1";
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$skipBadRecords = "";
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}
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// Show the login status:
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showLogin(); // (function 'showLogin()' is defined in 'include.inc.php')
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// (2a) Display header:
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// call the 'displayHTMLhead()' and 'showPageHeader()' functions (which are defined in 'header.inc.php'):
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displayHTMLhead(encodeHTML($officialDatabaseName) . $pageTitle, "index,follow", "Search the " . encodeHTML($officialDatabaseName), "", false, "", $viewType, array());
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showPageHeader($HeaderString);
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// (2b) Start <form> and <table> holding the form elements:
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echo "\n<form action=\"import_csa_modify.php\" method=\"POST\">";
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echo "\n<input type=\"hidden\" name=\"formType\" value=\"importCSA\">"
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. "\n<input type=\"hidden\" name=\"submit\" value=\"Import\">" // provide a default value for the 'submit' form tag. Otherwise, some browsers may not recognize the correct output format when a user hits <enter> within a form field (instead of clicking the "Import" button)
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. "\n<input type=\"hidden\" name=\"showLinks\" value=\"1\">"; // embed '$showLinks=1' so that links get displayed on any 'display details' page
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if (isset($errors['badRecords']))
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{
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if ($errors['badRecords'] == "all") // none of the given records had a recognized format
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{
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if (!empty($errors['skipBadRecords']))
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$skipBadRecordsInput = "<br>" . fieldError("skipBadRecords", $errors);
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else
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$skipBadRecordsInput = "";
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}
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elseif ($errors['badRecords'] == "some") // there were at least some records with recognized format but other records could NOT be recognized
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{
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if (!empty($skipBadRecords))
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$skipBadRecordsCheckBoxIsChecked = " checked"; // mark the 'Skip records with unrecognized data format' checkbox
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else
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$skipBadRecordsCheckBoxIsChecked = "";
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// display the 'Skip records with unrecognized data format' checkbox:
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$skipBadRecordsInput = "<br><input type=\"checkbox\" name=\"skipBadRecords\" value=\"1\"$skipBadRecordsCheckBoxIsChecked title=\"mark this checkbox to omit records with unrecognized data format during import\"> " . fieldError("skipBadRecords", $errors);
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}
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}
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else // all records did have a valid data format -> supress the 'Skip records with unrecognized data format' checkbox
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{
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$skipBadRecordsInput = "";
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}
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echo "\n<table align=\"center\" border=\"0\" cellpadding=\"0\" cellspacing=\"10\" width=\"95%\" summary=\"This table holds the CSA import form\">"
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. "\n<tr>\n\t<td width=\"58\" valign=\"top\"><b>" . $textEntryFormLabel . ":</b></td>\n\t<td width=\"10\"> </td>"
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. "\n\t<td colspan=\"3\">" . fieldError("sourceText", $errors) . $skipBadRecordsInput . "<textarea name=\"sourceText\" rows=\"6\" cols=\"60\" title=\"paste your CSA records here (requires 'full record' format!)\">$sourceText</textarea></td>"
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. "\n</tr>";
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if (!empty($showSource))
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$showSourceCheckBoxIsChecked = " checked"; // mark the 'Display original source data' checkbox
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else
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$showSourceCheckBoxIsChecked = "";
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echo "\n<tr>\n\t<td valign=\"top\"" . $rowSpan . "><b>Options:</b></td>\n\t<td" . $rowSpan . "> </td>"
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. "\n\t<td width=\"215\" valign=\"top\"" . $rowSpan . "><input type=\"checkbox\" name=\"showSource\" value=\"1\"$showSourceCheckBoxIsChecked title=\"mark this checkbox if original source data shall be displayed alongside the parsed data for easy comparison\"> Display original source data</td>";
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if (isset($_SESSION['user_permissions']) AND preg_match("/allow_batch_import/", $_SESSION['user_permissions'])) // if the 'user_permissions' session variable does contain 'allow_batch_import'...
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{
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if ($importRecordsRadio == "all")
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{
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$importRecordsRadioAllChecked = " checked"; // select the 'All' radio button
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$importRecordsRadioOnlyChecked = "";
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}
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else // $importRecordsRadio == "only"
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{
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$importRecordsRadioAllChecked = "";
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$importRecordsRadioOnlyChecked = " checked"; // select the 'Only' radio button
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}
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echo "\n\t<td width=\"98\" valign=\"top\"" . $rowSpan . ">Import records:</td>"
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. "\n\t<td valign=\"top\"><input type=\"radio\" name=\"importRecordsRadio\" value=\"all\"$importRecordsRadioAllChecked title=\"choose 'All' if you want to import all pasted records at once\"> All</td>"
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. "\n</tr>"
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. "\n<tr>"
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. "\n\t<td valign=\"top\">" . fieldError("importRecords", $errors) . "<input type=\"radio\" name=\"importRecordsRadio\" value=\"only\"$importRecordsRadioOnlyChecked title=\"choose 'Only' if you just want to import particular records from the pasted source data\"> Only: <input type=\"text\" name=\"importRecords\" value=\"$importRecords\" size=\"5\" title=\"enter the record number(s) here: e.g. enter '1-5' to import the first five records; or enter '1 3-5 7' to import records 1, 3, 4, 5 and 7\"></td>";
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}
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else
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{
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echo "\n\t<td colspan=\"2\"> </td>";
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}
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echo "\n</tr>";
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echo "\n<tr>\n\t<td> </td>\n\t<td> </td>";
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if (isset($_SESSION['user_permissions']) AND preg_match("/allow_import|allow_batch_import/", $_SESSION['user_permissions'])) // if the 'user_permissions' session variable contains either 'allow_import' or 'allow_batch_import'...
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// adjust the title string for the import button
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{
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$importButtonLock = "";
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$importTitle = "press this button to import the given source data";
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}
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else // Note, that disabling the submit button is just a cosmetic thing -- the user can still submit the form by pressing enter or by building the correct URL from scratch!
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{
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$importButtonLock = " disabled";
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$importTitle = "not available since you have no permission to import any records";
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}
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echo "\n\t<td colspan=\"3\">\n\t\t<input type=\"submit\" name=\"submit\" value=\"Import\"$importButtonLock title=\"$importTitle\">\n\t</td>"
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. "\n</tr>"
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. "\n<tr>\n\t<td align=\"center\" colspan=\"5\"> </td>"
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. "\n</tr>"
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. "\n<tr>\n\t<td valign=\"top\"><b>Help:</b></td>\n\t<td> </td>"
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. "\n\t<td valign=\"top\" colspan=\"3\">This form enables you to import records from the <a href=\"" . $importCSArecordsURL . "\" target=\"top\">" // '$importCSArecordsURL' is defined in 'ini.inc.php'
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. "Cambridge Scientific Abstracts</a> (CSA) Internet Database Service. The form requires the 'full record' format offered by the CSA Internet Database Service. An example of a valid CSA 'full record' format is given below:</td>"
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. "\n</tr>"
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. "\n<tr>\n\t<td valign=\"top\"><b>Example:</b></td>\n\t<td> </td>"
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. "\n\t<td valign=\"top\" colspan=\"3\"><pre>Record 1 of 52
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DN: Database Name
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ASFA: Aquatic Sciences and Fisheries Abstracts
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TI: Title
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Diet composition influences the growth of the pelagic mysid
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shrimp, Mysis mixta (Mysidacea)
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AU: Author
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Lehtiniemi, M; Vitasalo, M; Kuosa, H
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AF: Affiliation
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Finnish Institute of Marine Research, P.O. Box 33, FIN-00931
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Helsinki, Finland
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SO: Source
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Boreal Environment Research [Boreal Environ. Res.]. Vol. 7, no. 2,
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pp. 121-128. 2002.
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IS: ISSN
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1239-6095
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AB: Abstract
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We studied the growth, feeding, and elemental composition of Mysis
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mixta from June to September 1997 in the northern Baltic Sea. In
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June the juvenile population had a unimodal size distribution
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(mean length similar to 6 mm), but in July-August, the population
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was divided into two cohorts. A stomach content analysis showed
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that the mysids in the larger and faster growing cohort fed
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significantly more on crustacean zooplankton and pelagic material
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than the smaller one: the mean ratios of zooplankton:phytoplankton
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and pelagic:benthic particles in July-August were respectively
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0.27 and 0.11 for the small cohort, and 0.54 and 0.36 for the
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large cohort. This suggests that food quality and its energy
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content are important in influencing the growth of pelagic mysids
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in the northern Baltic. The C:N ratio of the two cohorts did not
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vary much, which shows that ingestion of food items with varying
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elemental content is not necessarily reflected in the elemental
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composition of consumers.
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LA: Language
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English
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SL: Summary Language
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English
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PY: Publication Year
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2002
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PD: Publication Date
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20020000
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PT: Publication Type
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Journal Article
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DE: Descriptors
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Growth; Feeding; Diets; Chemical composition; Seasonal variations;
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Mysis mixta; ANE, Baltic Sea
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TR: ASFA Input Center Number
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CS0309883
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CL: Classification
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Q1 01424 Age and growth; O 1070 Ecology/Community Studies
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UD: Update
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200305
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SF: Subfile
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ASFA 1: Biological Sciences & Living Resources; Oceanic Abstracts
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AN: Accession Number
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5449614
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F1: Fulltext Info
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1239-6095,7,2,121-128,2002
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A1: Alert Info
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20030606
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JN: Journal Name
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Boreal Environment Research
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JP: Journal Pages
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121-128
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JV: Journal Volume
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7
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JI: Journal Issue
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2
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DT: Document Type
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J
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BL: Bibliographic Level
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AS
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</pre></td>"
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. "\n</tr>"
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. "\n</table>"
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. "\n</form>";
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// --------------------------------------------------------------------
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// SHOW ERROR IN RED:
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function fieldError($fieldName, $errors)
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{
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if (isset($errors[$fieldName]))
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return "<b><span class=\"warning2\">" . $errors[$fieldName] . "</span></b><br>";
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}
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// --------------------------------------------------------------------
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// DISPLAY THE HTML FOOTER:
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// call the 'showPageFooter()' and 'displayHTMLfoot()' functions (which are defined in 'footer.inc.php')
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showPageFooter($HeaderString);
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displayHTMLfoot();
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// --------------------------------------------------------------------
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?>
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