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Refbase2X/update.php.org

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<?php

// turn on warnings and notice during developement include('initialize/PhpErrorSettings.inc.php');

/ Project: Web Reference Database (refbase) <http://www.refbase.net> / Copyright: Matthias Steffens <mailto:refbase@extracts.de> and the file's / original author(s). / / This code is distributed in the hope that it will be useful, / but WITHOUT ANY WARRANTY. Please see the GNU General Public / License for more details. / / File: ./update.php / Repository: $HeadURL: file:///svn/p/refbase/code/branches/bleeding-edge/update.php $ / Author(s): Matthias Steffens <mailto:refbase@extracts.de> / / Created: 01-Mar-05, 20:47 / Modified: $Date: 2015-02-16 20:53:19 +0000 (Mon, 16 Feb 2015) $ / $Author: karnesky $ / $Revision: 1405 $

/ This file will update any refbase MySQL database installation from v0.8.0 or greater to v0.9.6. / (Note that this script currently doesn't offer any conversion from 'latin1' to 'utf8') // CAUTION: YOU MUST REMOVE THIS SCRIPT FROM YOUR WEB DIRECTORY AFTER THE UPDATE!!

/ Incorporate some include files: include 'initialize/db.inc.php'; / 'db.inc.php' is included to hide username and password include 'includes/header.inc.php'; / include header include 'includes/footer.inc.php'; / include footer include 'includes/include.inc.php'; / include common functions include 'includes/install.inc.php'; / include install/update functions include 'initialize/ini.inc.php'; // include common variables

// ——————————————————————–

/ START A SESSION: / call the 'start_session()' function (from 'include.inc.php') which will also read out available session variables: start_session(false);

// ——————————————————————–

/ Initialize preferred display language: / (note that 'locales.inc.php' has to be included after the call to the 'start_session()' function) include 'includes/locales.inc.php'; // include the locales

// ——————————————————————–

/ This specifies the name of the database that handles the MySQL user access privileges. / Unless you've fiddled with it, you shouldn't change the default value ('mysql'): $adminDatabaseName = 'mysql';

// Extract any parameters passed to the script: if (isset($_REQUEST['adminUserName'])) $adminUserName = $_REQUEST['adminUserName']; else $adminUserName = "";

if (isset($_REQUEST['adminPassword'])) $adminPassword = $_REQUEST['adminPassword']; else $adminPassword = "";

// ——————————————————————–

// Check the correct parameters have been passed: if (empty($adminUserName) AND empty($adminPassword)) { / if 'update.php' was called without any valid parameters: / Display an update form:

if (isset($_SESSION['errors'])) { $errors = $_SESSION['errors'];

/ Note: though we clear the session variable, the current error message is still available to this script via '$errors': deleteSessionVariable("errors"); / function 'deleteSessionVariable()' is defined in 'include.inc.php' } else $errors = array(); // initialize the '$errors' variable in order to prevent 'Undefined variable…' messages

if (isset($_SESSION['formVars'])) { $formVars = $_SESSION['formVars'];

// Note: though we clear the session variable, the current form variables are still available to this script via '$formVars': deleteSessionVariable("formVars"); } else { // Reset the '$formVars' variable (since we're providing the default values): $formVars = array();

// provide the default values: $formVars["adminUserName"] = "root"; $formVars["adminPassword"] = ""; }

// If there's no stored message available: if (!isset($_SESSION['HeaderString'])) { if (empty($errors)) // provide the default message: $HeaderString = "To update refbase v0.8.0 or greater please fill out the form below and click the Update button:"; else // -> there were errors when validating the fields $HeaderString = "There were validation errors regarding the details you entered. Please check the comments above the respective fields:"; } else { $HeaderString = $_SESSION['HeaderString']; // extract 'HeaderString' session variable (only necessary if register globals is OFF!)

// Note: though we clear the session variable, the current message is still available to this script via '$HeaderString': deleteSessionVariable("HeaderString"); }

/ Extract the view type requested by the user (either 'Mobile', 'Print', 'Web' or ''): / ('' will produce the default 'Web' output style) if (isset($_REQUEST['viewType'])) $viewType = $_REQUEST['viewType']; else $viewType = "";

/ Show the login status: showLogin(); / (function 'showLogin()' is defined in 'include.inc.php')

/ DISPLAY header: / call the 'displayHTMLhead()' and 'showPageHeader()' functions (which are defined in 'header.inc.php'): displayHTMLhead(encodeHTML($officialDatabaseName) . " -- Update", "index,follow", "Update form for the " . encodeHTML($officialDatabaseName), "", false, "", $viewType, array()); showPageHeader($HeaderString);

// Start <form> and <table> holding the form elements: ?>

<form action="update.php" method="POST"> <input type="hidden" name="formType" value="update"> <input type="hidden" name="submit" value="Update"><?php // provide a default value for the 'submit' form tag. Otherwise, some browsers may not recognize the correct output format when a user hits <enter> within a form field (instead of clicking the "Update" button) ?>

<table align="center" border="0" cellpadding="0" cellspacing="12" width="95%" summary="This table holds the update form"> <tr> <td colspan="3"><h3>refbase Update</h3></td> </tr> <tr> <td width="190" valign="top"><b>Important Notes:</b></td> <td valign="top" colspan="2"> It's important that you make a <span class="warning">backup</span> copy of your original files <em>db.inc.php</em> and <em>ini.inc.php</em> (which are located within the <em>initialize</em> subdirectory of your refbase base directory). We also strongly recommend to <a href="http://backup.refbase.net/" target="top" title="Instructions how to backup your refbase MySQL database">backup</a> your existing refbase MySQL database before proceeding. <br> <br> Before executing this script, you <span class="warning">must edit</span> the updated include file <span class="warning"><em>initialize/db.inc.php</em></span> in a text editor and re-enter the values from your old <em>db.inc.php</em> file for the variables <em>$databaseName</em>, <em>$username</em> and <em>$password</em>. Then, proceed with this form: </td> </tr> <tr> <td valign="top"><b>MySQL Admin User:</b></td> <td valign="top"><?php echo fieldError("adminUserName", $errors); ?>

<input type="text" name="adminUserName" value="<?php echo encodeHTML($formVars["adminUserName"]); ?>" size="30"> </td> <td valign="top">Give the name of an administrative user that has full access to your MySQL database. Often, this is the <em>root</em> user.</td> </tr> <tr> <td valign="top"><b>MySQL Admin Password:</b></td> <td valign="top"><?php // the form won't remember the password, so we'll ask the user to re-type it... if (!empty($errors) AND !isset($errors["adminPassword"])) // ...if there were some validation errors but not with the password field echo "\n\t\t\t<b>Please type your password again:</b>\n\t\t\t<br>"; else echo fieldError("adminPassword", $errors); ?>

<input type="password" name="adminPassword" size="30"> </td> <td valign="top">Please enter the password for the administrative user you've specified above.</td> </tr> <tr> <td valign="top">&nbsp;</td> <td valign="top" align="right"> <input type="submit" name="submit" value="Update"> </td> <td valign="top">&nbsp;</td> </tr> </table> </form><?php

// ——————————————————————–

/ DISPLAY THE HTML FOOTER: / call the 'showPageFooter()' and 'displayHTMLfoot()' functions (which are defined in 'footer.inc.php') showPageFooter($HeaderString);

displayHTMLfoot();

// ——————————————————————–

} else // some parameters have been passed, so let's validate the fields: {

// ——————————————————————–

// Clear any errors that might have been found previously: $errors = array();

// Write the (POST) form variables into an array: foreach($_POST as $varname => $value) $formVars[$varname] = $value;

// Validate the 'adminUserName' field: if (empty($formVars["adminUserName"])) // The 'adminUserName' field cannot be a null string $errors["adminUserName"] = "This field cannot be blank:";

// Validate the 'adminPassword' field: if (empty($formVars["adminPassword"])) // The 'adminPassword' field cannot be a null string $errors["adminPassword"] = "This field cannot be blank:";

// ——————————————————————–

// Now the script has finished the validation, check if there were any errors: if (count($errors) > 0) { // Write back session variables: saveSessionVariable("errors", $errors); // function 'saveSessionVariable()' is defined in 'include.inc.php' saveSessionVariable("formVars", $formVars);

// There are errors. Relocate back to the update form: header("Location: update.php");

exit; // >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> !EXIT! <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< }

// ——————————————————————–

// If we made it here, then the data is considered valid!

/ (0) CLOSE EXISTING CONNECTION / we have to close the existing connection since we need to establish a new connection with admin permissions disconnectFromMySQLDatabase(); // function 'disconnectFromMySQLDatabase()' is defined in 'include.inc.php'

/ (1) OPEN ADMIN CONNECTION, (2) SELECT DATABASE connectToMySQLDatabaseAsAdmin($adminUserName, $adminPassword); / function 'connectToMySQLDatabaseAsAdmin()' is defined in 'install.inc.php'

// ——————————————————————–

// (2) RUN the SQL queries on the database through the admin connection:

/ NOTE: many simple, brain-dead UPDATE queries follow below / (we should probably have a SQL function and/or make this an array and process that)

$resultArray = array();

/ Alter table specification for table 'deleted' / TODO: create a new function 'changeColumn()' that only modifies the column spec if the new column spec is different from the old one $query = "ALTER table " . $tableDeleted . " MODIFY edition varchar(50) default NULL"; $result = queryMySQLDatabase($query); $resultArray["Table 'deleted': altered table specification. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0); // get the number of rows that were modified (or return 0 if an error occurred)

$query = "ALTER table " . $tableDeleted . " MODIFY thesis enum('Bachelor''s thesis','Honours thesis','Master''s thesis','Ph.D. thesis','Diploma thesis','Doctoral thesis','Habilitation thesis') default NULL"; $result = queryMySQLDatabase($query); $resultArray["Table 'deleted': altered table specification. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

// Alter table specification for table 'refs' $query = "ALTER table " . $tableRefs . " MODIFY edition varchar(50) default NULL"; $result = queryMySQLDatabase($query); $resultArray["Table 'refs': altered table specification. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "ALTER table " . $tableRefs . " MODIFY thesis enum('Bachelor''s thesis','Honours thesis','Master''s thesis','Ph.D. thesis','Diploma thesis','Doctoral thesis','Habilitation thesis') default NULL"; $result = queryMySQLDatabase($query); $resultArray["Table 'refs': altered table specification. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

// Add field 'version' to table 'deleted' $properties = "MEDIUMINT(8) UNSIGNED DEFAULT 1 AFTER modified_by"; $resultArray["Table 'deleted': added field 'version'"] = addColumnIfNotExists("version", $tableDeleted, $properties); // function 'addColumnIfNotExists()' is defined in 'install.inc.php'

// Add field 'version' to table 'refs' $properties = "MEDIUMINT(8) UNSIGNED DEFAULT 1 AFTER modified_by"; $resultArray["Table 'refs': added field 'version'"] = addColumnIfNotExists("version", $tableRefs, $properties);

/ Update table 'refs' $query = "UPDATE " . $tableRefs . " SET thesis = NULL WHERE thesis = ''"; / this fix is required to ensure correct sorting when outputting citations with '$citeOrder="type"' or '$citeOrder="type-year"' $result = queryMySQLDatabase($query); $resultArray["Table 'refs': updated 'thesis' field (replaced empty string with NULL). Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableRefs . " SET type = 'Conference Article' WHERE type RLIKE '^(Unsupported: )?Conference Proceeding$'"; // this may not be perfect since some items of type "Conference Proceeding" may be actually a "Conference Volume" $result = queryMySQLDatabase($query); $resultArray["Table 'refs': updated 'type' field ('Conference Proceeding' => 'Conference Article'). Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableRefs . " SET type = 'Miscellaneous' WHERE type RLIKE '^(Unsupported: )?Generic$'"; $result = queryMySQLDatabase($query); $resultArray["Table 'refs': updated 'type' field ('Generic' => 'Miscellaneous'). Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableRefs . " SET type = 'Newspaper Article' WHERE type RLIKE '^(Unsupported: )?Newspaper$'"; // this may not be perfect since some items of type "Newspaper" may be actually a "Newspaper Volume" $result = queryMySQLDatabase($query); $resultArray["Table 'refs': updated 'type' field ('Newspaper' => 'Newspaper Article'). Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableRefs . " SET type = 'Software' WHERE type RLIKE '^(Unsupported: )?Computer Program$'"; $result = queryMySQLDatabase($query); $resultArray["Table 'refs': updated 'type' field ('Computer Program' => 'Software'). Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableRefs . " SET type = REPLACE(type,'Unsupported: ','') WHERE type RLIKE '^Unsupported: (Abstract|Conference (Article|Volume)|Magazine Article|Manual|Miscellaneous|Newspaper Article|Patent|Report|Software)$'"; $result = queryMySQLDatabase($query); $resultArray["Table 'refs': updated 'type' field (removed 'Unsupported' label for all newly supported types). Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

// Add new utilities to table 'depends' $values = "(NULL, 'pdftotext', 'true', NULL)"; $resultArray["Table 'depends': inserted entry for 'pdftotext' utility"] = insertIfNotExists(array("depends_external" => "pdftotext"), $tableDepends, $values);

// Create new MySQL table 'user_options' $properties = "(option_id MEDIUMINT(8) UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY, " . "user_id MEDIUMINT(8) UNSIGNED NOT NULL DEFAULT '0', " . "export_cite_keys ENUM('yes','no') NOT NULL DEFAULT 'yes', " . "autogenerate_cite_keys ENUM('yes','no') NOT NULL DEFAULT 'yes', " . "prefer_autogenerated_cite_keys ENUM('no','yes') NOT NULL DEFAULT 'no', " . "use_custom_cite_key_format ENUM('no','yes') NOT NULL DEFAULT 'no', " . "cite_key_format VARCHAR(255) DEFAULT NULL, " . "uniquify_duplicate_cite_keys ENUM('yes','no') NOT NULL DEFAULT 'yes', " . "nonascii_chars_in_cite_keys ENUM('transliterate','strip','keep') DEFAULT NULL, " . "use_custom_text_citation_format ENUM('no','yes') NOT NULL DEFAULT 'no', " . "text_citation_format VARCHAR(255) DEFAULT NULL, " . "records_per_page SMALLINT(5) UNSIGNED DEFAULT NULL, " . "show_auto_completions ENUM('yes','no') NOT NULL DEFAULT 'yes', " . "main_fields TEXT, " . "INDEX (user_id))";

$resultArray["Created table 'user_options'"] = addTableIfNotExists($tableUserOptions, $properties); // function 'addTableIfNotExists()' is defined in 'install.inc.php'

// Insert default user options for anyone who's not logged in $values = "(NULL, 0, 'yes', 'yes', 'no', 'no', '<:authors:><:year:>', 'yes', NULL, 'no', '<:authors[2| & | et al.]:>< :year:>< {:recordIdentifier:}>', NULL, 'author, title, publication, keywords, abstract')"; $resultArray["Table 'user_options': inserted default options for anyone who's not logged in"] = insertIfNotExists(array("user_id" => 0), $tableUserOptions, $values); // function 'insertIfNotExists()' is defined in 'install.inc.php'

/ Insert default user options for all users / First, check how many users are contained in table 'users': $query = "SELECT user_id, first_name, last_name FROM " . $tableUsers; $result = queryMySQLDatabase($query); // function 'queryMySQLDatabase()' is defined in 'include.inc.php' $rowsFound = @ mysql_num_rows($result); if ($rowsFound > 0) // If there were rows (= user IDs) found ... { while ($row = @ mysql_fetch_array($result)) { $values = "(NULL, " . $row['user_id'] . ", 'yes', 'yes', 'no', 'yes', '<:authors[2|+|++]:><:year:>', 'yes', 'transliterate', 'no', '<:authors[2| & | et al.]:>< :year:>< {:recordIdentifier:}>', NULL, 'author, title, publication, keywords, abstract')"; $resultArray["Table 'user_options': inserted default options for user " . $row['user_id'] . " (" . $row['first_name'] . " " . $row['last_name'] . ")"] = insertIfNotExists(array("user_id" => $row['user_id']), $tableUserOptions, $values); } }

// Add field 'records_per_page' to table 'user_options' $properties = "SMALLINT(5) UNSIGNED DEFAULT NULL AFTER text_citation_format"; $resultArray["Table 'user_options': added field 'records_per_page'"] = addColumnIfNotExists("records_per_page", $tableUserOptions, $properties);

// Add field 'show_auto_completions' to table 'user_options' $properties = "ENUM('yes','no') NOT NULL DEFAULT 'yes' AFTER records_per_page"; $resultArray["Table 'user_options': added field 'show_auto_completions'"] = addColumnIfNotExists("show_auto_completions", $tableUserOptions, $properties);

// Add field 'main_fields' to table 'user_options' $properties = "TEXT AFTER show_auto_completions"; $resultArray["Table 'user_options': added field 'main_fields'"] = addColumnIfNotExists("main_fields", $tableUserOptions, $properties);

// Add field 'allow_browse_view' to table 'user_permissions' $properties = "ENUM('yes','no') NOT NULL DEFAULT 'yes' AFTER allow_print_view"; $resultArray["Table 'user_permissions': added field 'allow_browse_view'"] = addColumnIfNotExists("allow_browse_view", $tableUserPermissions, $properties);

// Add field 'allow_list_view' to table 'user_permissions' $properties = "ENUM('yes','no') NOT NULL DEFAULT 'yes' AFTER allow_upload"; $resultArray["Table 'user_permissions': added field 'allow_list_view'"] = addColumnIfNotExists("allow_list_view", $tableUserPermissions, $properties);

// Disable the Browse view feature (which isn't done yet) for all users $query= "UPDATE " . $tableUserPermissions . " SET allow_browse_view = 'no'"; $result = queryMySQLDatabase($query); $resultArray["Table 'user_permissions': disabled the Browse view feature (which isn't done yet). Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

// Enable the Export feature for anyone who's not logged in ('$userID = 0'): $query= "UPDATE " . $tableUserPermissions . " SET allow_export = 'yes', allow_batch_export = 'yes' WHERE user_id = 0"; $result = queryMySQLDatabase($query); $resultArray["Table 'user_permissions': enabled the export feature for anyone who's not logged in. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

// Update table 'styles' $query = "UPDATE " . $tableStyles . " SET style_spec = REPLACE(style_spec,'cite_','styles/cite_') WHERE style_spec RLIKE '^cite_'"; $result = queryMySQLDatabase($query); $resultArray["Table 'styles': updated 'style_spec' field. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$values = "(NULL, 'Ann Glaciol', 'true', 'styles/cite_AnnGlaciol_JGlaciol.php', 'B010', '1')"; $resultArray["Table 'styles': inserted style 'Ann Glaciol'"] = insertIfNotExists(array("style_name" => "Ann Glaciol"), $tableStyles, $values);

$values = "(NULL, 'J Glaciol', 'true', 'styles/cite_AnnGlaciol_JGlaciol.php', 'B030', '1')"; $resultArray["Table 'styles': inserted style 'J Glaciol'"] = insertIfNotExists(array("style_name" => "J Glaciol"), $tableStyles, $values);

$values = "(NULL, 'APA', 'true', 'styles/cite_APA.php', 'A010', '1')"; $resultArray["Table 'styles': inserted style 'APA'"] = insertIfNotExists(array("style_name" => "APA"), $tableStyles, $values);

$values = "(NULL, 'AMA', 'true', 'styles/cite_AMA.php', 'A020', '1')"; $resultArray["Table 'styles': inserted style 'AMA'"] = insertIfNotExists(array("style_name" => "AMA"), $tableStyles, $values);

$values = "(NULL, 'MLA', 'true', 'styles/cite_MLA.php', 'A030', '1')"; $resultArray["Table 'styles': inserted style 'MLA'"] = insertIfNotExists(array("style_name" => "MLA"), $tableStyles, $values);

$values = "(NULL, 'Chicago', 'true', 'styles/cite_Chicago.php', 'A070', '1')"; $resultArray["Table 'styles': inserted style 'Chicago'"] = insertIfNotExists(array("style_name" => "Chicago"), $tableStyles, $values);

$values = "(NULL, 'Harvard 1', 'true', 'styles/cite_Harvard_1.php', 'A090', '1')"; $resultArray["Table 'styles': inserted style 'Harvard 1'"] = insertIfNotExists(array("style_name" => "Harvard 1"), $tableStyles, $values);

$values = "(NULL, 'Harvard 2', 'true', 'styles/cite_Harvard_2.php', 'A093', '1')"; $resultArray["Table 'styles': inserted style 'Harvard 2'"] = insertIfNotExists(array("style_name" => "Harvard 2"), $tableStyles, $values);

$values = "(NULL, 'Harvard 3', 'true', 'styles/cite_Harvard_3.php', 'A096', '1')"; $resultArray["Table 'styles': inserted style 'Harvard 3'"] = insertIfNotExists(array("style_name" => "Harvard 3"), $tableStyles, $values);

$values = "(NULL, 'Vancouver', 'true', 'styles/cite_Vancouver.php', 'A110', '1')"; $resultArray["Table 'styles': inserted style 'Vancouver'"] = insertIfNotExists(array("style_name" => "Vancouver"), $tableStyles, $values);

$query = "UPDATE " . $tableStyles . " SET order_by = 'B010' WHERE style_name = 'Ann Glaciol'"; $result = queryMySQLDatabase($query); $resultArray["Table 'styles': updated 'Ann Glaciol' style. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableStyles . " SET order_by = 'B020' WHERE style_name = 'Deep Sea Res'"; $result = queryMySQLDatabase($query); $resultArray["Table 'styles': updated 'Deep Sea Res' style. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableStyles . " SET order_by = 'B030' WHERE style_name = 'J Glaciol'"; $result = queryMySQLDatabase($query); $resultArray["Table 'styles': updated 'J Glaciol' style. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableStyles . " SET order_by = 'B040' WHERE style_name = 'Mar Biol'"; $result = queryMySQLDatabase($query); $resultArray["Table 'styles': updated 'Mar Biol' style. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableStyles . " SET order_by = 'B050' WHERE style_name = 'MEPS'"; $result = queryMySQLDatabase($query); $resultArray["Table 'styles': updated 'MEPS' style. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableStyles . " SET order_by = 'B060' WHERE style_name = 'Polar Biol'"; $result = queryMySQLDatabase($query); $resultArray["Table 'styles': updated 'Polar Biol' style. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableStyles . " SET order_by = 'C010' WHERE style_name = 'Text Citation'"; $result = queryMySQLDatabase($query); $resultArray["Table 'styles': updated 'Text Citation' style. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

// Update table 'types' $query = "UPDATE " . $tableTypes . " SET order_by = '01' WHERE type_name = 'Journal Article'"; $result = queryMySQLDatabase($query); $resultArray["Table 'types': updated 'Journal Article' type. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableTypes . " SET order_by = '02' WHERE type_name = 'Abstract'"; $result = queryMySQLDatabase($query); $resultArray["Table 'types': updated 'Abstract' type. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableTypes . " SET order_by = '03' WHERE type_name = 'Book Chapter'"; $result = queryMySQLDatabase($query); $resultArray["Table 'types': updated 'Book Chapter' type. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableTypes . " SET order_by = '04' WHERE type_name = 'Book Whole'"; $result = queryMySQLDatabase($query); $resultArray["Table 'types': updated 'Book Whole' type. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableTypes . " SET order_by = '05' WHERE type_name = 'Conference Article'"; $result = queryMySQLDatabase($query); $resultArray["Table 'types': updated 'Conference Article' type. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableTypes . " SET order_by = '06' WHERE type_name = 'Conference Volume'"; $result = queryMySQLDatabase($query); $resultArray["Table 'types': updated 'Conference Volume' type. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableTypes . " SET order_by = '07' WHERE type_name = 'Journal'"; $result = queryMySQLDatabase($query); $resultArray["Table 'types': updated 'Journal' type. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableTypes . " SET order_by = '08' WHERE type_name = 'Magazine Article'"; $result = queryMySQLDatabase($query); $resultArray["Table 'types': updated 'Magazine Article' type. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableTypes . " SET order_by = '09' WHERE type_name = 'Manual'"; $result = queryMySQLDatabase($query); $resultArray["Table 'types': updated 'Manual' type. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableTypes . " SET order_by = '10' WHERE type_name = 'Manuscript'"; $result = queryMySQLDatabase($query); $resultArray["Table 'types': updated 'Manuscript' type. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableTypes . " SET order_by = '11' WHERE type_name = 'Map'"; $result = queryMySQLDatabase($query); $resultArray["Table 'types': updated 'Map' type. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableTypes . " SET order_by = '12' WHERE type_name = 'Miscellaneous'"; $result = queryMySQLDatabase($query); $resultArray["Table 'types': updated 'Miscellaneous' type. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableTypes . " SET order_by = '13' WHERE type_name = 'Newspaper Article'"; $result = queryMySQLDatabase($query); $resultArray["Table 'types': updated 'Newspaper Article' type. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableTypes . " SET order_by = '14' WHERE type_name = 'Patent'"; $result = queryMySQLDatabase($query); $resultArray["Table 'types': updated 'Patent' type. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableTypes . " SET order_by = '15' WHERE type_name = 'Report'"; $result = queryMySQLDatabase($query); $resultArray["Table 'types': updated 'Report' type. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableTypes . " SET order_by = '16' WHERE type_name = 'Software'"; $result = queryMySQLDatabase($query); $resultArray["Table 'types': updated 'Software' type. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$values = "(NULL, 'Abstract', 'true', 2, '02')"; $resultArray["Table 'types': inserted type 'Abstract'"] = insertIfNotExists(array("type_name" => "Abstract"), $tableTypes, $values);

$values = "(NULL, 'Conference Article', 'true', 2, '05')"; $resultArray["Table 'types': inserted type 'Conference Article'"] = insertIfNotExists(array("type_name" => "Conference Article"), $tableTypes, $values);

$values = "(NULL, 'Conference Volume', 'true', 3, '06')"; $resultArray["Table 'types': inserted type 'Conference Volume'"] = insertIfNotExists(array("type_name" => "Conference Volume"), $tableTypes, $values);

$values = "(NULL, 'Magazine Article', 'true', 1, '08')"; $resultArray["Table 'types': inserted type 'Magazine Article'"] = insertIfNotExists(array("type_name" => "Magazine Article"), $tableTypes, $values);

$values = "(NULL, 'Manual', 'true', 3, '09')"; $resultArray["Table 'types': inserted type 'Manual'"] = insertIfNotExists(array("type_name" => "Manual"), $tableTypes, $values);

$values = "(NULL, 'Miscellaneous', 'true', 3, '12')"; $resultArray["Table 'types': inserted type 'Miscellaneous'"] = insertIfNotExists(array("type_name" => "Miscellaneous"), $tableTypes, $values);

$values = "(NULL, 'Newspaper Article', 'true', 1, '13')"; $resultArray["Table 'types': inserted type 'Newspaper Article'"] = insertIfNotExists(array("type_name" => "Newspaper Article"), $tableTypes, $values);

$values = "(NULL, 'Patent', 'true', 3, '14')"; $resultArray["Table 'types': inserted type 'Patent'"] = insertIfNotExists(array("type_name" => "Patent"), $tableTypes, $values);

$values = "(NULL, 'Report', 'true', 3, '15')"; $resultArray["Table 'types': inserted type 'Report'"] = insertIfNotExists(array("type_name" => "Report"), $tableTypes, $values);

$values = "(NULL, 'Software', 'true', 3, '16')"; $resultArray["Table 'types': inserted type 'Software'"] = insertIfNotExists(array("type_name" => "Software"), $tableTypes, $values);

// Add new language options to table 'languages' $values = "(NULL, 'fr', 'true', '3')"; $resultArray["Table 'languages': inserted French language option"] = insertIfNotExists(array("language_name" => "fr"), $tableLanguages, $values);

$values = "(NULL, 'es', 'false', '4')"; $resultArray["Table 'languages': inserted Spanish language option"] = insertIfNotExists(array("language_name" => "es"), $tableLanguages, $values);

$values = "(NULL, 'cn', 'true', '5')"; $resultArray["Table 'languages': inserted Chinese language option"] = insertIfNotExists(array("language_name" => "cn"), $tableLanguages, $values);

$values = "(NULL, 'ru', 'true', '6')"; $resultArray["Table 'languages': inserted Russian language option"] = insertIfNotExists(array("language_name" => "ru"), $tableLanguages, $values);

$values = "(NULL, 'ja', 'true', '7')"; $resultArray["Table 'languages': inserted Japanese language option"] = insertIfNotExists(array("language_name" => "ja"), $tableLanguages, $values);

// Enable disabled localizations $query = "UPDATE " . $tableLanguages . " SET language_enabled = 'true' WHERE language_name = 'de'"; $result = queryMySQLDatabase($query); $resultArray["Table 'languages': enabled German language option. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

// Alter table specification for table 'formats' $query = "ALTER table " . $tableFormats . " MODIFY format_type enum('export','import','cite') NOT NULL default 'export'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': altered table specification. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

// Update existing formats in table 'formats' $query = "UPDATE " . $tableFormats . " SET format_name = 'BibTeX' WHERE format_name = 'Bibtex'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': renamed format name 'Bibtex' to 'BibTeX'. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

// Update existing import formats in table 'formats' $query = "UPDATE " . $tableFormats . " SET format_spec = 'bibutils/import_bib2refbase.php', order_by = 'A010' WHERE format_name = 'BibTeX' AND format_type = 'import'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'BibTeX' import format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'A020' WHERE format_name = 'Copac' AND format_type = 'import'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'Copac' import format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'A030' WHERE format_name = 'CSA' AND format_type = 'import'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'CSA' import format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET format_spec = 'bibutils/import_end2refbase.php', order_by = 'A040' WHERE format_name = 'Endnote' AND format_type = 'import'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'Endnote' import format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'A045' WHERE format_name = 'Endnote XML' AND format_type = 'import'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'Endnote XML' import format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET format_name = 'ISI', format_spec = 'import_isi2refbase.php', order_by = 'A050', depends_id = 1 WHERE (format_name = 'RIS (ISI)' OR format_name = 'ISI') AND format_type = 'import'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'ISI' import format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'A060' WHERE format_name = 'Pubmed Medline' AND format_type = 'import'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'Pubmed Medline' import format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET format_spec = 'bibutils/import_med2refbase.php', order_by = 'A065' WHERE format_name = 'Pubmed XML' AND format_type = 'import'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'Pubmed XML' import format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'A070' WHERE format_name = 'RefWorks' AND format_type = 'import'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'RefWorks' import format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET format_spec = 'import_ris2refbase.php', order_by = 'A080', depends_id = 1 WHERE format_name = 'RIS' AND format_type = 'import'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'RIS' import format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'A090' WHERE format_name = 'SciFinder' AND format_type = 'import'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'SciFinder' import format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'A100' WHERE format_name = 'Text (Tab-Delimited)' AND format_type = 'import'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'Text (Tab-Delimited)' import format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'A150' WHERE format_name = 'CrossRef XML' AND format_type = 'import'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'CrossRef XML' import format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET format_spec = 'bibutils/import_modsxml2refbase.php', order_by = 'A160', depends_id = 2 WHERE format_name = 'MODS XML' AND format_type = 'import'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'MODS XML' import format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'A170' WHERE format_name = 'OAI_DC XML' AND format_type = 'import'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'OAI_DC XML' import format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

// Add new import formats in table 'formats' $values = "(NULL, 'Copac', 'import', 'true', 'bibutils/import_copac2refbase.php', 'A020', 2)"; $resultArray["Table 'formats': inserted 'Copac' import format"] = insertIfNotExists(array("format_name" => "Copac", "format_type" => "import"), $tableFormats, $values);

$values = "(NULL, 'CSA', 'import', 'true', 'import_csa2refbase.php', 'A030', 1)"; $resultArray["Table 'formats': inserted 'CSA' import format"] = insertIfNotExists(array("format_name" => "CSA", "format_type" => "import"), $tableFormats, $values);

$values = "(NULL, 'Endnote XML', 'import', 'true', 'bibutils/import_endx2refbase.php', 'A045', 2)"; $resultArray["Table 'formats': inserted 'Endnote XML' import format"] = insertIfNotExists(array("format_name" => "Endnote XML", "format_type" => "import"), $tableFormats, $values);

$values = "(NULL, 'Pubmed Medline', 'import', 'true', 'import_medline2refbase.php', 'A060', 1)"; $resultArray["Table 'formats': inserted 'Pubmed Medline' import format"] = insertIfNotExists(array("format_name" => "Pubmed Medline", "format_type" => "import"), $tableFormats, $values);

$values = "(NULL, 'RefWorks', 'import', 'true', 'import_refworks2refbase.php', 'A070', 1)"; $resultArray["Table 'formats': inserted 'RefWorks' import format"] = insertIfNotExists(array("format_name" => "RefWorks", "format_type" => "import"), $tableFormats, $values);

$values = "(NULL, 'SciFinder', 'import', 'true', 'import_scifinder2refbase.php', 'A090', 1)"; $resultArray["Table 'formats': inserted 'SciFinder' import format"] = insertIfNotExists(array("format_name" => "SciFinder", "format_type" => "import"), $tableFormats, $values);

$values = "(NULL, 'Text (Tab-Delimited)', 'import', 'true', 'import_tabdelim2refbase.php', 'A100', 1)"; $resultArray["Table 'formats': inserted 'Text (Tab-Delimited)' import format"] = insertIfNotExists(array("format_name" => "Text (Tab-Delimited)", "format_type" => "import"), $tableFormats, $values);

$values = "(NULL, 'arXiv XML', 'import', 'true', 'import_arxiv2refbase.php', 'A130', 1)"; $resultArray["Table 'formats': inserted 'arXiv XML' import format"] = insertIfNotExists(array("format_name" => "arXiv XML", "format_type" => "import"), $tableFormats, $values);

$values = "(NULL, 'CrossRef XML', 'import', 'true', 'import_crossref2refbase.php', 'A150', 1)"; $resultArray["Table 'formats': inserted 'CrossRef XML' import format"] = insertIfNotExists(array("format_name" => "CrossRef XML", "format_type" => "import"), $tableFormats, $values);

// Update existing export formats in table 'formats' $query = "UPDATE " . $tableFormats . " SET order_by = 'B010' WHERE format_name = 'BibTeX' AND format_type = 'export'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'BibTeX' export format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'B040' WHERE format_name = 'Endnote' AND format_type = 'export'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'Endnote' export format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'B050' WHERE format_name = 'ISI' AND format_type = 'export'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'ISI' export format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'B080' WHERE format_name = 'RIS' AND format_type = 'export'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'RIS' export format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'B105' WHERE format_name = 'Text (CSV)' AND format_type = 'export'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'Text (CSV)' export format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET format_name = 'Atom XML', format_enabled = 'true', format_spec ='export_atomxml.php', order_by = 'B140' WHERE format_name = 'OpenSearch RSS' AND format_type = 'export'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'OpenSearch RSS' export format, and renamed it to 'Atom XML'. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'B160' WHERE format_name = 'MODS XML' AND format_type = 'export'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'MODS XML' export format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'B170' WHERE format_name = 'OAI_DC XML' AND format_type = 'export'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'OAI_DC XML' export format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'B180' WHERE format_name = 'ODF XML' AND format_type = 'export'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'ODF XML' export format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET format_name = 'SRW_MODS XML', order_by = 'B195' WHERE format_name = 'SRW XML' AND format_type = 'export'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'SRW XML' export format, and renamed it to 'SRW_MODS XML'. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'B200' WHERE format_name = 'Word XML' AND format_type = 'export'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'Word XML' export format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

// Add new export formats in table 'formats' $values = "(NULL, 'ADS', 'export', 'true', 'bibutils/export_xml2ads.php', 'B005', 2)"; $resultArray["Table 'formats': inserted 'ADS' export format"] = insertIfNotExists(array("format_name" => "ADS", "format_type" => "export"), $tableFormats, $values);

$values = "(NULL, 'ISI', 'export', 'true', 'bibutils/export_xml2isi.php', 'B050', 2)"; $resultArray["Table 'formats': inserted 'ISI' export format"] = insertIfNotExists(array("format_name" => "ISI", "format_type" => "export"), $tableFormats, $values);

$values = "(NULL, 'Atom XML', 'export', 'true', 'export_atomxml.php', 'B140', 1)"; $resultArray["Table 'formats': inserted 'Atom XML' export format"] = insertIfNotExists(array("format_name" => "Atom XML", "format_type" => "export"), $tableFormats, $values);

$values = "(NULL, 'OAI_DC XML', 'export', 'true', 'export_oaidcxml.php', 'B170', 1)"; $resultArray["Table 'formats': inserted 'OAI_DC XML' export format"] = insertIfNotExists(array("format_name" => "OAI_DC XML", "format_type" => "export"), $tableFormats, $values);

$values = "(NULL, 'ODF XML', 'export', 'true', 'export_odfxml.php', 'B180', 1)"; $resultArray["Table 'formats': inserted 'ODF XML' export format"] = insertIfNotExists(array("format_name" => "ODF XML", "format_type" => "export"), $tableFormats, $values);

$values = "(NULL, 'SRW_DC XML', 'export', 'true', 'export_srwxml.php', 'B190', 1)"; $resultArray["Table 'formats': inserted 'SRW_DC XML' export format"] = insertIfNotExists(array("format_name" => "SRW_DC XML", "format_type" => "export"), $tableFormats, $values);

$values = "(NULL, 'SRW_MODS XML', 'export', 'true', 'export_srwxml.php', 'B195', 1)"; $resultArray["Table 'formats': inserted 'SRW_MODS XML' export format"] = insertIfNotExists(array("format_name" => "SRW_MODS XML", "format_type" => "export"), $tableFormats, $values);

$values = "(NULL, 'Word XML', 'export', 'true', 'bibutils/export_xml2word.php', 'B200', 2)"; $resultArray["Table 'formats': inserted 'Word XML' export format"] = insertIfNotExists(array("format_name" => "Word XML", "format_type" => "export"), $tableFormats, $values);

// Update existing citation formats in table 'formats' $query = "UPDATE " . $tableFormats . " SET order_by = 'C010' WHERE format_name = 'html' AND format_type = 'cite'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'html' citation format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'C020' WHERE format_name = 'RTF' AND format_type = 'cite'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'RTF' citation format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'C030' WHERE format_name = 'PDF' AND format_type = 'cite'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'PDF' citation format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'C040' WHERE format_name = 'LaTeX' AND format_type = 'cite'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'LaTeX' citation format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'C045' WHERE format_name = 'LaTeX .bbl' AND format_type = 'cite'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'LaTeX .bbl' citation format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'C050' WHERE format_name = 'Markdown' AND format_type = 'cite'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'Markdown' citation format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

$query = "UPDATE " . $tableFormats . " SET order_by = 'C060' WHERE format_name = 'ASCII' AND format_type = 'cite'"; $result = queryMySQLDatabase($query); $resultArray["Table 'formats': updated 'ASCII' citation format. Affected rows"] = ($result ? mysql_affected_rows($connection) : 0);

// Add new citation formats in table 'formats' $values = "(NULL, 'html', 'cite', 'true', 'formats/cite_html.php', 'C010', 1)"; $resultArray["Table 'formats': inserted 'html' citation format"] = insertIfNotExists(array("format_name" => "html", "format_type" => "cite"), $tableFormats, $values);

$values = "(NULL, 'RTF', 'cite', 'true', 'formats/cite_rtf.php', 'C020', 1)"; $resultArray["Table 'formats': inserted 'RTF' citation format"] = insertIfNotExists(array("format_name" => "RTF", "format_type" => "cite"), $tableFormats, $values);

$values = "(NULL, 'PDF', 'cite', 'true', 'formats/cite_pdf.php', 'C030', 1)"; $resultArray["Table 'formats': inserted 'PDF' citation format"] = insertIfNotExists(array("format_name" => "PDF", "format_type" => "cite"), $tableFormats, $values);

$values = "(NULL, 'LaTeX', 'cite', 'true', 'formats/cite_latex.php', 'C040', 1)"; $resultArray["Table 'formats': inserted 'LaTeX' citation format"] = insertIfNotExists(array("format_name" => "LaTeX", "format_type" => "cite"), $tableFormats, $values);

$values = "(NULL, 'LaTeX .bbl', 'cite', 'true', 'formats/cite_latex_bbl.php', 'C045', 1)"; $resultArray["Table 'formats': inserted 'LaTeX .bbl' citation format"] = insertIfNotExists(array("format_name" => "LaTeX .bbl", "format_type" => "cite"), $tableFormats, $values);

$values = "(NULL, 'Markdown', 'cite', 'true', 'formats/cite_markdown.php', 'C050', 1)"; $resultArray["Table 'formats': inserted 'Markdown' citation format"] = insertIfNotExists(array("format_name" => "Markdown", "format_type" => "cite"), $tableFormats, $values);

$values = "(NULL, 'ASCII', 'cite', 'true', 'formats/cite_ascii.php', 'C060', 1)"; $resultArray["Table 'formats': inserted 'ASCII' citation format"] = insertIfNotExists(array("format_name" => "ASCII", "format_type" => "cite"), $tableFormats, $values);

/ Enable some of the existing export formats (which were previously disabled by default) for anyone who's not logged in ('$userID = 0'): / Fetch IDs for all formats that shall be enabled: $formatIDArray = array(); $query = "SELECT format_id, format_name FROM " . $tableFormats . " WHERE (format_name RLIKE '^(BibTeX|Endnote|RIS)$' AND format_type = 'export')"; $result = queryMySQLDatabase($query); $rowsFound = @ mysql_num_rows($result); if ($rowsFound > 0) { while ($row = @ mysql_fetch_array($result)) $formatIDArray[$row['format_id']] = $row['format_name']; }

foreach ($formatIDArray as $formatID => $formatName) { $values = "(NULL, " . $formatID . ", 0, 'true')"; $resultArray["Table 'user_formats': enabled format '" . $formatName . "' for anyone who's not logged in"] = insertIfNotExists(array("format_id" => $formatID), $tableUserFormats, $values, "0"); }

/ Enable some of the newly created export/citation formats, citation styles & resource types for all users: / Fetch IDs for all formats that shall be enabled: $formatIDArray = array(); $query = "SELECT format_id, format_name FROM " . $tableFormats . " WHERE (format_name RLIKE '^(ISI|ODF XML|Word XML)$' AND format_type = 'export') OR (format_name RLIKE '^(html|RTF|PDF|LaTeX)$' AND format_type = 'cite')"; $result = queryMySQLDatabase($query); $rowsFound = @ mysql_num_rows($result); if ($rowsFound > 0) { while ($row = @ mysql_fetch_array($result)) $formatIDArray[$row['format_id']] = $row['format_name']; }

// Fetch IDs for all styles that shall be enabled: $styleIDArray = array(); $query = "SELECT style_id, style_name FROM " . $tableStyles . " WHERE style_name RLIKE '^(AMA|APA|Chicago|Harvard( [0-9]+)?|J Glaciol|MLA|Vancouver)$'"; $result = queryMySQLDatabase($query); $rowsFound = @ mysql_num_rows($result); if ($rowsFound > 0) { while ($row = @ mysql_fetch_array($result)) $styleIDArray[$row['style_id']] = $row['style_name']; }

// Fetch IDs for all types that shall be enabled: $typeIDArray = array(); $query = "SELECT type_id, type_name FROM " . $tableTypes . " WHERE type_name RLIKE '^(Abstract|Conference Article|Conference Volume|Magazine Article|Manual|Miscellaneous|Newspaper Article|Patent|Report|Software)$'"; $result = queryMySQLDatabase($query); $rowsFound = @ mysql_num_rows($result); if ($rowsFound > 0) { while ($row = @ mysql_fetch_array($result)) $typeIDArray[$row['type_id']] = $row['type_name']; }

// Enable formats, styles & types for anyone who's not logged in ('$userID = 0'): foreach ($formatIDArray as $formatID => $formatName) { $values = "(NULL, " . $formatID . ", 0, 'true')"; $resultArray["Table 'user_formats': enabled format '" . $formatName . "' for anyone who's not logged in"] = insertIfNotExists(array("format_id" => $formatID), $tableUserFormats, $values, "0"); }

foreach ($styleIDArray as $styleID => $styleName) { $values = "(NULL, " . $styleID . ", 0, 'true')"; $resultArray["Table 'user_styles': enabled style '" . $styleName . "' for anyone who's not logged in"] = insertIfNotExists(array("style_id" => $styleID), $tableUserStyles, $values, "0"); }

foreach ($typeIDArray as $typeID => $typeName) { $values = "(NULL, " . $typeID . ", 0, 'true')"; $resultArray["Table 'user_types': enabled type '" . $typeName . "' for anyone who's not logged in"] = insertIfNotExists(array("type_id" => $typeID), $tableUserTypes, $values, "0"); }

/ Enable formats, styles & types for all users: / First, check how many users are contained in table 'users': $query = "SELECT user_id, first_name, last_name FROM " . $tableUsers; $result = queryMySQLDatabase($query); $rowsFound = @ mysql_num_rows($result); if ($rowsFound > 0) // If there were rows (= user IDs) found ... { while ($row = @ mysql_fetch_array($result)) { foreach ($formatIDArray as $formatID => $formatName) { $values = "(NULL, " . $formatID . ", " . $row['user_id'] . ", 'true')"; $resultArray["Table 'user_formats': enabled format '" . $formatName . "' for user " . $row['user_id'] . " (" . $row['first_name'] . " " . $row['last_name'] . ")"] = insertIfNotExists(array("format_id" => $formatID), $tableUserFormats, $values, $row['user_id']); }

foreach ($styleIDArray as $styleID => $styleName) { $values = "(NULL, " . $styleID . ", " . $row['user_id'] . ", 'true')"; $resultArray["Table 'user_styles': enabled style '" . $styleName . "' for user " . $row['user_id'] . " (" . $row['first_name'] . " " . $row['last_name'] . ")"] = insertIfNotExists(array("style_id" => $styleID), $tableUserStyles, $values, $row['user_id']); }

foreach ($typeIDArray as $typeID => $typeName) { $values = "(NULL, " . $typeID . ", " . $row['user_id'] . ", 'true')"; $resultArray["Table 'user_types': enabled type '" . $typeName . "' for user " . $row['user_id'] . " (" . $row['first_name'] . " " . $row['last_name'] . ")"] = insertIfNotExists(array("type_id" => $typeID), $tableUserTypes, $values, $row['user_id']); } } }

// (3) ERRORS

/ Check whether any tables/rows were affected by the performed SQL queries: unset($resultArray["Table 'deleted': altered table specification. Affected rows"]); / currently, we simply remove again the results of the 'ALTER TABLE' queries since they will always affect every row in that table unset($resultArray["Table 'refs': altered table specification. Affected rows"]); unset($resultArray["Table 'formats': altered table specification. Affected rows"]);

foreach($resultArray as $varname > $value) if (($value = "0") OR ($value == "false")) unset($resultArray[$varname]); // remove any action that didn't affect any table or rows

if (empty($resultArray)) { $HeaderString = "Nothing was changed! Your refbase installation is up-to-date.";

// Write back session variables: saveSessionVariable("HeaderString", $HeaderString); }

// (4) CLOSE ADMIN CONNECTION disconnectFromMySQLDatabase();

// ——————————————————————–

// Provide a feedback page:

/ If there's no stored message available: if (!isset($_SESSION['HeaderString'])) / provide a default message: { $HeaderString = "Update of the Web Reference Database was successful!"; } else { $HeaderString = $_SESSION['HeaderString']; // extract 'HeaderString' session variable (only necessary if register globals is OFF!)

// Note: though we clear the session variable, the current message is still available to this script via '$HeaderString': deleteSessionVariable("HeaderString"); }

/ Extract the view type requested by the user (either 'Mobile', 'Print', 'Web' or ''): / ('' will produce the default 'Web' output style) if (isset($_REQUEST['viewType'])) $viewType = $_REQUEST['viewType']; else $viewType = "";

/ Show the login status: showLogin(); / (function 'showLogin()' is defined in 'include.inc.php')

/ DISPLAY header: / call the 'displayHTMLhead()' and 'showPageHeader()' functions (which are defined in 'header.inc.php'): displayHTMLhead(encodeHTML($officialDatabaseName) . " -- Update Feedback", "index,follow", "Update feedback for the " . encodeHTML($officialDatabaseName), "", false, "", $viewType, array()); showPageHeader($HeaderString);

// Start a <table>: ?>

<table align="center" border="0" cellpadding="0" cellspacing="10" width="95%" summary="This table holds the update feedback info"><?php

if (!empty($resultArray)) // if something was changed, add a welcome title: { ?>

<tr> <td colspan="2"><h3>Welcome to refbase v0.9.6!</h3></td> </tr><?php

}

// following note will be always displayed no matter if something was changed or not: ?>

<tr> <td valign="top"><b>Important Note:</b></td> <td> The files <em>update.php</em> and <em>update.sql</em> (as well as <em>install.php</em> and <em>install.sql</em>) are only provided for update/installation purposes and are not needed anymore. Due to security considerations you should <span class="warning">remove these files</span> from your web directory NOW!! </td> </tr><?php

if (!empty($resultArray)) // if something was changed, add some configuration info: { ?>

<tr> <td valign="top"><b>Configure refbase:</b></td> <td> In order to re-establish your existing settings, please open file <em>initialize/ini.inc.php</em> in a text editor and restore all values from your old <em>ini.inc.php</em> file. The new include file contains new settings which you should check out and adopt to your needs if needed. Please see the comments within the file for further information. </td> </tr> <tr> <td valign="top"><b>Log:</b></td> <td> Following update actions were performed successfully: </td> </tr> <tr> <td valign="top">&nbsp;</td> <td> <pre><?php

foreach($resultArray as $varname => $value) { if ($value == "true") echo $varname . ".\n"; else echo $varname . ": " . $value . "\n"; } ?> </pre> </td> </tr><?php

} ?>

</table><?php

// ——————————————————————–

/ DISPLAY THE HTML FOOTER: / call the 'showPageFooter()' and 'displayHTMLfoot()' functions (which are defined in 'footer.inc.php') showPageFooter($HeaderString);

displayHTMLfoot();

// ——————————————————————–

} ?>